do_gsva: Do gsva

In wt12318/Easy_Bioinfo: Make some common bioinformatic workfolw easier to operate

Do gsva

Description

Do gsva

Usage

do_gsva(exp_dt, gmt_path, exp_type = "array", ...)

Arguments

exp_dt	A normalized gene expression dataset, genes corresponding to rows and samples corresponding to columns.
gmt_path	Pathway gmt file path
exp_type	expression type, can be "array" or "RNA-seq"
...	other param for gsva

Value

gene-set-by-sample expression data matrix

Examples

res <- do_gsva(as.matrix(tpm_gene_log2),"inst/extdata/h.all.v7.4.symbols.gmt",exp_type = "array",parallel.sz=4)

wt12318/Easy_Bioinfo documentation built on June 17, 2022, 9:22 a.m.