Files in wulingyun/CopTea
Combinatorial OPTimization based Enrichment Analysis
.Rbuildignore
.gitignore
CopTea.Rproj
DESCRIPTION
NAMESPACE
R/CEA.R
R/CopTea-package.R
R/annotation.R
R/mapping.R
R/matrix.R
R/netgen.R
R/network.R
R/utils.R
man/CEA.Rd
man/CopTea-package.Rd
man/build_sim_net.Rd
man/get_GO_annotations.Rd
man/get_GO_leafs.Rd
man/get_annotated_genes.Rd
man/get_annotations.Rd
man/get_gene_sets.Rd
man/get_significant_terms.Rd
man/id_mapping.Rd
man/id_mapping_from_symbol.Rd
man/id_mapping_species.Rd
man/id_mapping_to_symbol.Rd
man/kappa_score.Rd
man/netgen.Rd
man/require_bioc.Rd
man/toMatrix.Rd
src/ColSums.cpp
src/CopTea.cpp
src/CopTea.h
src/Depths.cpp
src/misc.cpp
vignettes/Functional_Enrichment_Analysis.R
vignettes/Functional_Enrichment_Analysis.Rmd
vignettes/Functional_Enrichment_Analysis.pdf
vignettes/GO_BP_300.RData
vignettes/PPI.RData
vignettes/active_gene.RData
