build_sim_net | Build the gene similarity network from annoations |
CEA | CEA |
CopTea-package | CopTea - Combinatorial optimization based enrichment analysis |
get_annotated_genes | Get annotated gene list |
get_annotations | Get annotations from databases |
get_gene_sets | Transform the gene lists into the matrix of gene sets |
get_GO_annotations | Extract GO temrs information from GO annotation |
get_GO_leafs | Get GO leaf terms |
get_significant_terms | Get significant term list |
id_mapping | Mapping between different gene ids |
id_mapping_from_symbol | Mapping gene symbols to central ids |
id_mapping_species | Mapping gene central ids from one species to other species |
id_mapping_to_symbol | Mapping central ids to gene symbols |
kappa_score | Cohen's kappa score |
netgen | NetGen |
require_bioc | Load a Bioconductor package |
toMatrix | Turn a two-columns mapping table to matrix |
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