Man pages for wulingyun/CopTea
Combinatorial OPTimization based Enrichment Analysis
| build_sim_net | Build the gene similarity network from annoations |
| CEA | CEA |
| CopTea-package | CopTea - Combinatorial optimization based enrichment analysis |
| get_annotated_genes | Get annotated gene list |
| get_annotations | Get annotations from databases |
| get_gene_sets | Transform the gene lists into the matrix of gene sets |
| get_GO_annotations | Extract GO temrs information from GO annotation |
| get_GO_leafs | Get GO leaf terms |
| get_significant_terms | Get significant term list |
| id_mapping | Mapping between different gene ids |
| id_mapping_from_symbol | Mapping gene symbols to central ids |
| id_mapping_species | Mapping gene central ids from one species to other species |
| id_mapping_to_symbol | Mapping central ids to gene symbols |
| kappa_score | Cohen's kappa score |
| netgen | NetGen |
| require_bioc | Load a Bioconductor package |
| toMatrix | Turn a two-columns mapping table to matrix |
