dcm2nii_wrapper: Creates the dcm2niix system commands for the conversion

In wulms/bidsconvertr: Converts DICOM data to NIfTI and structure the NIfTI data in BIDS specification

Creates the dcm2niix system commands for the conversion

Description

Creates the dcm2niix system commands for the conversion

Usage

dcm2nii_wrapper(
  input_folder,
  output_folder,
  scanner_type,
  dcm2niix_local_path = normalizePath(dcm2niix_path, mustWork = F),
  dcm2niix_string
)

Arguments

scanner_type	MRI scanner vendor type
input	Folder path(s) containing dicoms
output	Folder path(s) where the nii images should be exported to
dcm2niix_path	Path to dcm2niix tool on your system

Value

List of dcm2niix system commands

Examples

## Not run: dcm2nii_wrapper("root_folder/session_id/participant_id/", "nii/session-id/participant-id/")

wulms/bidsconvertr documentation built on Sept. 17, 2023, 11:22 p.m.