API for wurst-theke/bratwurst
What the package does (short line)
| Global functions | |
|---|---|
| FeatureStats,nmfExperiment-method | Man page |
| FrobError,nmfExperiment-method | Man page |
| HMatrix,nmfExperiment-method | Man page |
| HMatrixList,nmfExperiment-method | Man page |
| OptK,nmfExperiment-method | Man page |
| OptKStats,nmfExperiment-method | Man page |
| SignatureSpecificFeatures,nmfExperiment-method | Man page |
| WMatrix,nmfExperiment-method | Man page |
| WMatrixList,nmfExperiment-method | Man page |
| amariDistance | Man page Source code |
| attributeComparisonSignatures | Man page Source code |
| build_granges_object | Man page Source code |
| calculate_FI | Man page Source code |
| calculate_for_classifier_range | Man page Source code |
| computeAbsDelta | Man page Source code |
| computeAbsDelta4OptK | Man page Source code |
| computeAmariDistances | Man page Source code |
| computeCoefVar | Man page Source code |
| computeCopheneticCoeff | Man page Source code |
| computeCpuFrobErrors | Man page Source code |
| computeEntropy | Man page Source code |
| computeEntropy4OptK | Man page Source code |
| computeFeatureStats | Man page Source code |
| computeFisher4Regions | Man page Source code |
| computeFrobErrorStats | Man page Source code |
| computeMeanDiff4SignatureCombs | Man page Source code |
| computeNES | Man page Source code |
| computePValue4FrobError | Man page Source code |
| computePeakStats4Regions | Man page Source code |
| computeRecoveryAUC | Man page Source code |
| computeRegionFC | Man page Source code |
| computeRegionFC4GRlist | Man page Source code |
| computeRmdAUCs | Man page Source code |
| computeRunningPeakStats4Regions | Man page Source code |
| computeSignatureSpecificFeatures | Man page Source code |
| computeSilhoutteWidth | Man page Source code |
| cosineDiss | Man page Source code |
| cosineDissMat | Man page Source code |
| cosineDist | Man page Source code |
| cosineSim | Man page Source code |
| extract_signature_specific_genes | Man page Source code |
| filter_features | Man page Source code |
| filter_specific_features | Man page Source code |
| generateRiverplot | Man page Source code |
| generate_classifier | Man page Source code |
| getColorAnno | Man page Source code |
| getColorMap | Man page Source code |
| getCpuHMatrixList | Man page Source code |
| getCpuWMatrixList | Man page Source code |
| getFrobError | Man page Source code |
| getHMatrixList | Man page Source code |
| getIndex4SignatureCombs | Man page Source code |
| getSignatureCombCounts | Man page Source code |
| getSignatureNames | Man page Source code |
| getWMatrixList | Man page Source code |
| igvCoord2Grange | Man page Source code |
| local.maxima | Source code |
| local.minima | Source code |
| match_and_count | Man page Source code |
| merge.nmf | Man page Source code |
| nmfExperiment | Man page |
| nmfExperiment-class | Man page |
| nmfExperimentFromFile | Man page Source code |
| nmfExperimentFromMatrix | Man page Source code |
| nnls_sol | Man page Source code |
| normalizeH | Man page Source code |
| normalizeUpperQuartile | Man page Source code |
| normalizeW | Man page Source code |
| orderBinary | Man page Source code |
| performRowKmeans | Man page Source code |
| plotHMatrix | Man page Source code |
| plotHeatmap4MatrixList | Man page Source code |
| plotKStats | Man page Source code |
| plotRankedFrobErrors | Man page Source code |
| plotSignatureFeatures | Man page Source code |
| proposeOptK | Man page Source code |
| rankTransform | Man page Source code |
| regularizeH | Man page Source code |
| relabelRiverplot | Man page Source code |
| reorderEdges | Man page Source code |
| runNmfCpu | Man page Source code |
| runNmfGpu | Man page Source code |
| runNmfGpuPyCuda | Man page Source code |
| science_theme | Man page Source code |
| setFeatureStats,nmfExperiment-method | Man page |
| setFrobError,nmfExperiment-method | Man page |
| setHMatrixList,nmfExperiment-method | Man page |
| setOptK,nmfExperiment-method | Man page |
| setOptKStats,nmfExperiment-method | Man page |
| setSignatureSpecificFeatures,nmfExperiment-method | Man page |
| setWMatrixList,nmfExperiment-method | Man page |
| sigmoidTransform | Man page Source code |
| sigmoidTransform2 | Man page Source code |
| translateBratwurstToYAPSA | Man page Source code |
| writeTmpMatrix | Man page Source code |
| yNodeCoords | Man page Source code |
