Files in wurst-theke/bratwurst
What the package does (short line)

Bratwurst.Rproj
CONTRIBUTORS
DESCRIPTION
LICENSE
NAMESPACE
R/classifier_functions.R R/enrichment_functions.R R/interact_functions.R R/nmfExperiment-class.R R/nmf_functions.R R/plot_functions.R R/preprocessing_functions.R README.Rmd
README.html
README.md
README_files/figure-html/unnamed-chunk-18-1.png
README_files/figure-html/unnamed-chunk-19-1.png
README_files/figure-html/unnamed-chunk-21-1.png
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README_files/figure-html/unnamed-chunk-24-2.png
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Readme.txt
data/ALL_AML_data.txt
data/leukemia.rda
data/microarray_annotation.txt
data/microarray_genes.bed
data/sample_annotation.txt
inst/nmf-gpu_ALLexpData.R inst/nmf-gpu_wRapper.R
inst/python/nmf_mult.py
man/FeatureStats-nmfExperiment-method.Rd man/FrobError-nmfExperiment-method.Rd man/HMatrix-nmfExperiment-method.Rd man/HMatrixList-nmfExperiment-method.Rd man/OptK-nmfExperiment-method.Rd man/OptKStats-nmfExperiment-method.Rd man/SignatureSpecificFeatures-nmfExperiment-method.Rd man/WMatrix-nmfExperiment-method.Rd man/WMatrixList-nmfExperiment-method.Rd man/amariDistance.Rd man/attributeComparisonSignatures.Rd man/build_granges_object.Rd man/calculate_FI.Rd man/calculate_for_classifier_range.Rd man/computeAbsDelta.Rd man/computeAbsDelta4OptK.Rd man/computeAmariDistances.Rd man/computeCoefVar.Rd man/computeCopheneticCoeff.Rd man/computeCpuFrobErrors.Rd man/computeEntropy.Rd man/computeEntropy4OptK.Rd man/computeFeatureStats.Rd man/computeFisher4Regions.Rd man/computeFrobErrorStats.Rd man/computeMeanDiff4SignatureCombs.Rd man/computeNES.Rd man/computePValue4FrobError.Rd man/computePeakStats4Regions.Rd man/computeRecoveryAUC.Rd man/computeRegionFC.Rd man/computeRegionFC4GRlist.Rd man/computeRmdAUCs.Rd man/computeRunningPeakStats4Regions.Rd man/computeSignatureSpecificFeatures.Rd man/computeSilhoutteWidth.Rd man/cosineDiss.Rd man/cosineDissMat.Rd man/cosineDist.Rd man/cosineSim.Rd man/extract_signature_specific_genes.Rd man/filter_features.Rd man/filter_specific_features.Rd man/generateRiverplot.Rd man/generate_classifier.Rd man/getColorAnno.Rd man/getColorMap.Rd man/getCpuHMatrixList.Rd man/getCpuWMatrixList.Rd man/getFrobError.Rd man/getHMatrixList.Rd man/getIndex4SignatureCombs.Rd man/getSignatureCombCounts.Rd man/getSignatureNames.Rd man/getWMatrixList.Rd man/igvCoord2Grange.Rd man/match_and_count.Rd man/merge.nmf.Rd man/nmfExperiment-class.Rd man/nmfExperimentFromFile.Rd man/nmfExperimentFromMatrix.Rd man/nnls_sol.Rd man/normalizeH.Rd man/normalizeUpperQuartile.Rd man/normalizeW.Rd man/orderBinary.Rd man/performRowKmeans.Rd man/plotHMatrix.Rd man/plotHeatmap4MatrixList.Rd man/plotKStats.Rd man/plotRankedFrobErrors.Rd man/plotSignatureFeatures.Rd man/proposeOptK.Rd man/rankTransform.Rd man/regularizeH.Rd man/relabelRiverplot.Rd man/reorderEdges.Rd man/runNmfCpu.Rd man/runNmfGpu.Rd man/runNmfGpuPyCuda.Rd man/science_theme.Rd man/setFeatureStats-nmfExperiment-method.Rd man/setFrobError-nmfExperiment-method.Rd man/setHMatrixList-nmfExperiment-method.Rd man/setOptK-nmfExperiment-method.Rd man/setOptKStats-nmfExperiment-method.Rd man/setSignatureSpecificFeatures-nmfExperiment-method.Rd man/setWMatrixList-nmfExperiment-method.Rd man/sigmoidTransform.Rd man/sigmoidTransform2.Rd man/translateBratwurstToYAPSA.Rd man/writeTmpMatrix.Rd man/yNodeCoords.Rd vignettes/Bratwurst.Rmd
vignettes/Bratwurst.html
vignettes/NMF.png
wurst-theke/bratwurst documentation built on May 17, 2019, 9:14 a.m.