generateRiverplot: Generate a riverplot object that displays the similarities...

In wurst-theke/bratwurst: What the package does (short line)

Description

Generate a riverplot object that displays the similarities between signatures at different factorization ranks

Usage

generateRiverplot(nmf.exp, edges.cutoff = 0, useH = FALSE, color = TRUE)

Arguments

edges.cutoff	cutoff until which similarities are displayed
useH	whether to relate signatures (FALSE) or exposures (TRUE)
color	whether to colorize the nodes based on PCA of the signatures

Value

ret riverplot object

Examples

plt <- generateRiverplot(nmf.exp, edges.cutoff = 0.2)
plot(plt, plot_area = 1, yscale = 0.6, nodewidth = 0.5)

wurst-theke/bratwurst documentation built on May 17, 2019, 9:14 a.m.