docs/installation.md

In wwylab/DeMixT: Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms

layout: page title: Installation disable_anchors: true description: ~

The DeMixT source files are compatible with Windows, Linux, and MacOS. This version is for users who have OpenMP on the computer.

We recommend the user to install DeMixT (v 1.20.0) from Bioconductor:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DeMixT")

If needed, the user can install it from GitHub:

if (!require("devtools", quietly = TRUE))
    install.packages('devtools')

devtools::install_github("wwylab/DeMixT")

Check if DeMixT is installed successfully:

# load package
library(DeMixT)

wwylab/DeMixT documentation built on July 17, 2024, 9:14 p.m.