API for wyguo/RTDBox
High resolution Transcriptome using Single Molecule PacBio Iso-seq data
| Global functions | |
|---|---|
| DNArevComplement | Man page Source code |
| HCsite | Man page Source code |
| N50 | Source code |
| N90 | Source code |
| SJanalysis | Man page Source code |
| SummaryTranSite | Man page Source code |
| TSanalysis | Man page Source code |
| bed2gtf | Man page Source code |
| cleanMcols | Source code |
| countReads | Man page Source code |
| countSliding | Man page Source code |
| exon2intron | Man page Source code |
| export_gtf | Man page Source code |
| getGeneCollapse | Source code |
| getGeneRange | Source code |
| getMonoExonGenes | Source code |
| getMonoExonTrans | Source code |
| getMultiExonTrans | Source code |
| getOverlapRange | Source code |
| getTransRange | Source code |
| gff2gtf | Source code |
| gr2gtf | Source code |
| gtf2bed | Man page Source code |
| intron2SJchain | Source code |
| makeGtfAttributes | Man page Source code |
| matchGeneID | Man page Source code |
| plotRanges | Source code Source code |
| plotTrans | Source code |
| rowratio | Man page |
| rtdFilter | Man page Source code |
| rtdMerge | Man page Source code |
| rtdSummary | Source code |
| subGR | Source code |
