scPlotNucleosomeQC: Plot Nucleosome signal enrichment

scPlotNucleosomeQCR Documentation

Plot Nucleosome signal enrichment

Description

Plot Nucleosome signal enrichment

Usage

scPlotNucleosomeQC(
  fragment = NULL,
  nsQC = NULL,
  region = "chr1-1-2000000",
  threshold = 4,
  log.scale = FALSE
)

Arguments

fragment

a fragment object.

nsQC

Nucleosome QC information from function 'scNucleosomeQC'

region

Genome region, like "chr1-1-2000000"

threshold

Threshold to separate low and high quality cells

log.scale

plot in log scale or not.

Details

Plot the normalized Nucleosome signal enrichment score.

Value

Returns a ggplot2 object


wzthu/esATAC documentation built on Aug. 12, 2022, 7:41 a.m.