API for wzthu/pipeFrame
Pipeline framework for bioinformatics in R

Global functions
$ Man page
$,Step-method Man page
$<- Man page
$<-,Step-method Man page
.onLoad Source code
Step Man page
Step-class Man page
Utils Man page
addEdges Man page Source code
argv Man page
argv,Step-method Man page
checkAllPath Man page
checkAllPath,Step-method Man page
checkAndInstall Source code
checkAndInstallBSgenome Man page Source code
checkAndInstallGenomeFa Man page Source code
checkAndInstallOrgDb Man page Source code
checkAndInstallTxDb Man page Source code
checkFileCreatable Man page Source code
checkFileExist Man page Source code
checkPathExist Man page Source code
checkRelation Source code
checkRequireParam Man page
checkRequireParam,Step-method Man page
clearStepCache Man page
clearStepCache,Step-method Man page
genReport Man page
getAutoPath Man page
getAutoPath,Step-method Man page
getBasenamePrefix Man page Source code
getCheckAndInstallFunc Source code
getGenome Man page Source code
getGraphObj Source code
getJobDir Man page Source code
getJobName Man page Source code
getNextSteps Man page Source code
getObjsInPipe Man page Source code
getParam Man page
getParam,Step-method Man page
getParamItems Man page
getParamItems,Step-method Man page
getParamMD5Path Man page
getParamMD5Path,Step-method Man page
getPathPrefix Man page Source code
getPipeName Man page Source code
getPrevSteps Man page Source code
getRef Man page Source code
getRefDir Man page Source code
getRefFiles Man page Source code
getRefRc Man page Source code
getStepWorkDir Man page
getStepWorkDir,Step-method Man page
getThreads Man page Source code
getTmpDir Man page Source code
getValidGenome Man page Source code
graphMng Man page
init Man page
init,Step-method Man page
initPipeFrame Man page Source code
input Man page
input,Step-method Man page
input<- Man page
input<-,Step-method Man page
isReady Man page
isReady,Step-method Man page
msgBoxBegin Source code
msgBoxDone Source code
output Man page
output,Step-method Man page
output<- Man page
output<-,Step-method Man page
param Man page
param,Step-method Man page
param<- Man page
param<-,Step-method Man page
pipeName Man page
pipeName,Step-method Man page
printMap Man page Source code
processing Man page
property Man page
property,Step-method Man page
property<- Man page
property<-,Step-method Man page
report Man page
report,Step-method Man page
report<- Man page
report<-,Step-method Man page
runWithFinishCheck Man page Source code
setGenome Man page Source code
setJobName Man page Source code
setPipeName Man page Source code
setRefDir Man page Source code
setThreads Man page Source code
setTmpDir Man page Source code
stepID Man page
stepID,Step-method Man page
stepName Man page
stepName,Step-method Man page
stepType Man page
stepType,Step-method Man page
writeLog Man page
writeLog,Step-method Man page
wzthu/pipeFrame documentation built on Nov. 16, 2019, 2:20 a.m.