Man pages for wzthu/pipeFrame
Pipeline framework for bioinformatics in R

getObjsInPipeObtain all of objects in the specific pipeline
graphMngStep graph management
ignoreCheckignore checking input and output file (for developer)
initPipeFrameinitialize the pipeFrame package
loadConfigload configure from file
loadStepload step object from rds file
runWithFinishCheckInstall dependent data or software with finishing check
setGenomeConfigure genome for all steps
setJobNameConfigure the job name for following steps.
setPipeNameConfigure the pipe name for following steps.
setRefDirSet the reference directory
setThreadsConfigure the maximum number of threads
setTmpDirConfigure the directory for intermediate results of all steps
Step-classMethods for Step objects
UtilsFunctions for directory operations
wzthu/pipeFrame documentation built on Dec. 31, 2019, 5:07 p.m.