plotTTree: Plot a transmission tree in a detailed format
In xavierdidelot/TransPhylo: Inference of Transmission Tree from a Dated Phylogeny
plotTTree R Documentation
Plot a transmission tree in a detailed format
Description
Plot a transmission tree in a detailed format
Usage
plotTTree(ttree, w.shape, w.scale, showLabels = TRUE, maxTime = NA, cex = 1)
Arguments
ttree
Transmission tree
w.shape
Shape parameter of the Gamma probability density function representing the generation time
w.scale
Scale parameter of the Gamma probability density function representing the generation time
showLabels
Whether or not to show the labels
maxTime
Maximum value of time to show on x axis
cex
Expansion factor
Value
Returns invisibly the first parameter
Examples
plotTTree(extractTTree(simulateOutbreak()),2,1)
xavierdidelot/TransPhylo documentation built on Sept. 28, 2023, 7:20 p.m.
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| plotTTree | R Documentation |
Plot a transmission tree in a detailed format
Description
Plot a transmission tree in a detailed format
Usage
plotTTree(ttree, w.shape, w.scale, showLabels = TRUE, maxTime = NA, cex = 1)
Arguments
ttree |
Transmission tree |
w.shape |
Shape parameter of the Gamma probability density function representing the generation time |
w.scale |
Scale parameter of the Gamma probability density function representing the generation time |
showLabels |
Whether or not to show the labels |
maxTime |
Maximum value of time to show on x axis |
cex |
Expansion factor |
Value
Returns invisibly the first parameter
Examples
plotTTree(extractTTree(simulateOutbreak()),2,1)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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