probPTreeGivenTTree: Calculate the probability of a phylogenetic tree given a...
In xavierdidelot/TransPhylo: Inference of Transmission Tree from a Dated Phylogeny
probPTreeGivenTTree R Documentation
Calculate the probability of a phylogenetic tree given a transmission tree
Description
Calculate the probability of a phylogenetic tree given a transmission tree
Usage
probPTreeGivenTTree(ctree, neg, w = integer(0))
Arguments
ctree
Combined phylogenetic/transmission tree
neg
Within-host coalescent rate
w
Vector of hosts for which to calculate the probability, or nothing for all
Value
Probability of phylogeny given transmission tree
xavierdidelot/TransPhylo documentation built on Sept. 28, 2023, 7:20 p.m.
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| probPTreeGivenTTree | R Documentation |
Calculate the probability of a phylogenetic tree given a transmission tree
Description
Calculate the probability of a phylogenetic tree given a transmission tree
Usage
probPTreeGivenTTree(ctree, neg, w = integer(0))
Arguments
ctree |
Combined phylogenetic/transmission tree |
neg |
Within-host coalescent rate |
w |
Vector of hosts for which to calculate the probability, or nothing for all |
Value
Probability of phylogeny given transmission tree
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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