CalculateHyperScore: Over-representation analysis using hypergeometric tests
In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data
CalculateHyperScore R Documentation
Over-representation analysis using hypergeometric tests
Description
Over-representation analysis using hypergeometric tests
The probability is calculated from obtaining equal or higher number
of hits using 1-phyper. Since phyper is a cumulative probability,
to get P(X>=hit.num) => P(X>(hit.num-1))
Usage
CalculateHyperScore(mSetObj = NA)
Arguments
mSetObj
Input the name of the created mSetObj (see InitDataObjects)
Author(s)
Jeff Xia jeff.xia@mcgill.ca
McGill University, Canada
License: GNU GPL (>= 2)
xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.
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| CalculateHyperScore | R Documentation |
Over-representation analysis using hypergeometric tests
Description
Over-representation analysis using hypergeometric tests The probability is calculated from obtaining equal or higher number of hits using 1-phyper. Since phyper is a cumulative probability, to get P(X>=hit.num) => P(X>(hit.num-1))
Usage
CalculateHyperScore(mSetObj = NA)
Arguments
mSetObj |
Input the name of the created mSetObj (see InitDataObjects) |
Author(s)
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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