CalculateHyperScore: Over-representation analysis using hypergeometric tests

View source: R/enrich_stats.R

CalculateHyperScoreR Documentation

Over-representation analysis using hypergeometric tests

Description

Over-representation analysis using hypergeometric tests The probability is calculated from obtaining equal or higher number of hits using 1-phyper. Since phyper is a cumulative probability, to get P(X>=hit.num) => P(X>(hit.num-1))

Usage

CalculateHyperScore(mSetObj = NA)

Arguments

mSetObj

Input the name of the created mSetObj (see InitDataObjects)

Author(s)

Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)


xia-lab/MetaboAnalystR documentation built on April 20, 2024, 8:13 p.m.