CalculateOraScore: Calculate ORA score
In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data
View source: R/enrich_path_stats.R
CalculateOraScore R Documentation
Calculate ORA score
Description
Calculate the over representation analysis score
Usage
CalculateOraScore(mSetObj=NA, nodeImp, method)
Arguments
mSetObj
Input the name of the created mSetObj (see InitDataObjects)
nodeImp
Indicate the pathway topology analysis, "rbc" for relative-betweeness centrality,
and "dgr" for out-degree centrality.
method
is "fisher" or "hyperg"
Author(s)
Jeff Xia jeff.xia@mcgill.ca
McGill University, Canada
License: GNU GPL (>= 2)
xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.
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View source: R/enrich_path_stats.R
| CalculateOraScore | R Documentation |
Calculate ORA score
Description
Calculate the over representation analysis score
Usage
CalculateOraScore(mSetObj=NA, nodeImp, method)
Arguments
mSetObj |
Input the name of the created mSetObj (see InitDataObjects) |
nodeImp |
Indicate the pathway topology analysis, "rbc" for relative-betweeness centrality, and "dgr" for out-degree centrality. |
method |
is "fisher" or "hyperg" |
Author(s)
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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