CalculateOraScore: Calculate ORA score

View source: R/enrich_path_stats.R

CalculateOraScoreR Documentation

Calculate ORA score

Description

Calculate the over representation analysis score

Usage

CalculateOraScore(mSetObj=NA, nodeImp, method)

Arguments

mSetObj

Input the name of the created mSetObj (see InitDataObjects)

nodeImp

Indicate the pathway topology analysis, "rbc" for relative-betweeness centrality, and "dgr" for out-degree centrality.

method

is "fisher" or "hyperg"

Author(s)

Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)


xia-lab/MetaboAnalystR documentation built on June 10, 2024, 12:22 p.m.