sampleQcPlot.sampleDataset: Generate a panel of sample QC plots across a list of...

In xiaolicbs/samplyzer:

Generate a panel of sample QC plots across a list of qcMetrics

Description

Generate a panel of sample QC plots across a list of qcMetrics

Usage

## S3 method for class 'sampleDataset'
sampleQcPlot(object, qcMetrics, annotation = NULL,
  geom = c("scatter", "violin", "hist"), outliers = NULL, legend = T,
  main = "QC", position = c("right", "bottom"), ncols = 5, show = TRUE)

Arguments

object	SampleDataset object
qcMetrics	a character string or a vector includes QC metrics to explore; if unspecified, all QC metrics in the SDS will be used.
geom	a character string indicating which visualization pattern to be used. One of strings 'scatter', 'violin' or 'hist' can be used.
outliers	a vector of IDs of outliers to show on the figure
legend	whether to include a legend or not
position	position of the legend
annotations	a character string of sample annotation to stratify by

Value

a list of grob objects

xiaolicbs/samplyzer documentation built on Sept. 4, 2023, 9:23 p.m.