README.md
In xiaowenchenjax/epihet: Determining Epigenetic Heterogeneity from Bisulfite Sequencing Data
epihet
Introduction
epiHet is a R package to calculate the intra-tumoral epigenetic heterogeneity and performing differentially epigenetic heterogeneity analysis from high-throughput bisulfite sequencing. epihet implements a biological network analysis workflow for transforming cancer type-specific differentially epigenetic heterogeneity loci into cancer-related biological function and clinical biomarker.
How to use
The input bam file may be obtained from bisseq pipeline (https://pbtech-vc.med.cornell.edu/git/thk2008/bisseq/tree/master/) for aligning bisulfite sequencing reads.
xiaowenchenjax/epihet documentation built on May 5, 2019, 9:20 a.m.
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epihet
Introduction
epiHet is a R package to calculate the intra-tumoral epigenetic heterogeneity and performing differentially epigenetic heterogeneity analysis from high-throughput bisulfite sequencing. epihet implements a biological network analysis workflow for transforming cancer type-specific differentially epigenetic heterogeneity loci into cancer-related biological function and clinical biomarker.
How to use
The input bam file may be obtained from bisseq pipeline (https://pbtech-vc.med.cornell.edu/git/thk2008/bisseq/tree/master/) for aligning bisulfite sequencing reads.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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