Man pages for xiaowenchenjax/epihet
Determining Epigenetic Heterogeneity from Bisulfite Sequencing Data
| background | background |
| compMatrix | Make Comparison Matrix |
| datTraits | datTraits |
| DEG | DEG |
| DEH | DEH |
| diffHet | Calculate Differential Heterogeneity |
| diffhetmatrix | diffhetmatrix |
| epiBox | Make Boxplot from Comparison Matrix |
| epiMA | Make MA Plot |
| epiMap | Make Pheatmap from Comparison Matrix |
| epinetwork | Construct co-epihet network based on DEH loci. |
| epipathway | pathway annotation |
| epiPCA | Make PCA Plot from Comparison Matrix |
| epiTSNE | Make TSNE Plot from Comparison Matrix |
| jaccard | Jaccard score calculation between modules from two subtypes. |
| makeGR | Make List of GenomicRanges Object |
| methClone | A wrapper function for methclone package |
| moduleanno | module annotation |
| moduledm | moduledm |
| modulesil | modulesil |
| modulesim | module comparison between two subtypes. |
| modulevisual | Modules visualization and |
| promoter | promoter |
| readGR | Make GenomicRanges Object |
| shannon | Shannon Entropy |
| sharedmatrix | sharedmatrix |
| splitn | The subtring extraction of a character vector |
| summarize | Summarize Data |
| userobj | GenomicRanges object generation |
