Description Usage Arguments Author(s) References
Internal function. Calculates the cladogenesis rate given the current number of species in the system, the carrying capacity and the per capita cladogenesis rate
1 2 3 4 5 6 7 8 9 10 11 12 13 | get_clado_rate(
timeval,
lac,
hyper_pars = NULL,
area_pars,
dist_pars,
island_ontogeny,
sea_level = 0,
num_spec,
K,
trait_pars = NULL,
island_spec = NULL
)
|
timeval |
current time of simulation |
lac |
per capita cladogenesis rate |
hyper_pars |
A numeric vector for hyperparameters for the rate calculations:
|
area_pars |
a named list containing area and sea level parameters as
created by
|
dist_pars |
a numeric for the distance from the mainland. |
island_ontogeny |
a numeric describing the type of island ontogeny.
Can be |
sea_level |
a numeric describing sea level can be |
num_spec |
a numeric with the ccurrent number of species. |
K |
carrying capacity |
trait_pars |
A named list containing diversification rates considering
two trait states created by
|
island_spec |
Matrix with current state of simulation containing number of species. |
Pedro Neves
Valente, Luis M., Rampal S. Etienne, and Albert B. Phillimore. "The effects of island ontogeny on species diversity and phylogeny." Proceedings of the Royal Society of London B: Biological Sciences 281.1784 (2014): 20133227.
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