Description Usage Arguments Author(s) References See Also
Function to describe changes in extinction rate through time. From Valente et al 2014 ProcB
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | get_ext_rate(
timeval,
mu,
ext_pars,
hyper_pars,
area_pars,
island_ontogeny,
sea_level = 0,
extcutoff = 1000,
num_spec,
K,
trait_pars = NULL,
island_spec = NULL
)
|
timeval |
current time of simulation |
mu |
extinction rate |
ext_pars |
a numeric vector:
|
hyper_pars |
A numeric vector for hyperparameters for the rate calculations:
|
area_pars |
a named list containing area and sea level parameters as
created by
|
island_ontogeny |
a string describing the type of island ontogeny.
Can be |
sea_level |
a numeric describing sea level can be |
extcutoff |
cutoff for extinction rate preventing it from being too large and slowing down simulation. Default is 1100 |
num_spec |
a numeric with the current number of species |
K |
carrying capacity |
trait_pars |
A named list containing diversification rates considering
two trait states created by
|
island_spec |
Matrix with current state of simulation containing number of species. |
Pedro Neves, Joshua Lambert
Valente, Luis M., Rampal S. Etienne, and Albert B. Phillimore. "The effects of island ontogeny on species diversity and phylogeny." Proceedings of the Royal Society of London B: Biological Sciences 281.1784 (2014): 20133227.
Other rate calculations:
DAISIE_plot_area()
,
get_ana_rate()
,
get_immig_rate()
,
island_area_vector()
,
island_area()
,
update_max_rates()
,
update_rates()
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