DAISIE_plot_cladogenesis: Plot cladogenesis rate through time

In xieshu95/Test-Trasie: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Description

Plot cladogenesis rate through time

Usage

DAISIE_plot_cladogenesis(totaltime, K, Apars, lac,
  island_ontogeny = "beta", removed_timepoints, resolution)

Arguments

totaltime	total time of simulation
K	K (clade-level carrying capacity)
Apars	a named list containing area parameters as created by create_area_params: [1]: maximum area [2]: value from 0 to 1 indicating where in the island's history the peak area is achieved [3]: sharpness of peak [4]: total island age
lac	minimum per capita cladogenesis rate
island_ontogeny	a string describing the type of island ontogeny. Can be NULL, beta for a beta function describing area through time, or linear for a linear function
removed_timepoints	starting position of time vector
resolution	resolution of time axis

Value

a plot with per capita cladogenesis rate through time and dataframe with immigration at corresponding time

Author(s)

Pedro Neves

xieshu95/Test-Trasie documentation built on Dec. 18, 2019, 7:34 a.m.