create_rates: Create the rates per ?island

In xieshu95/Test-Trasie: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Description

Create the rates per ?island

Usage

create_rates(immig_rate, ext_rate, ana_rate, clado_rate, ext_rate_max,
  immig_rate_max, clado_rate_max, Tpars = NULL)

Arguments

immig_rate	immigration rate
ext_rate	extinction rate
ana_rate	anagenesis rate
clado_rate	cladogenesis rate
ext_rate_max	maximum extinction rate
immig_rate_max	maximum immigration rate
clado_rate_max	maximum cladogenesis rate
Tpars	A named list containing diversification rates considering two trait states: [1]:A numeric with the per capita transition rate with state1 [2]:A numeric with the per capita immigration rate with state2 [3]:A numeric with the per capita extinction rate with state2 [4]:A numeric with the per capita anagenesis rate with state2 [5]:A numeric with the per capita cladogenesis rate with state2 [6]:A numeric with the per capita transition rate with state2 [7]:A numeric with the number of species with trait state 2 on mainland

Value

the rates, as can be verified by are_rates

Examples

testit::assert(
  DAISIE:::are_rates(
    create_rates(
      immig_rate = 0.1,
      ext_rate = 0.2,
      ana_rate = 0.3,
      clado_rate = 0.4,
      ext_rate_max = 0.5,
      immig_rate_max = 0.6,
      clado_rate_max = 0.7,
      Tpars = NULL
  )
)
)

xieshu95/Test-Trasie documentation built on Dec. 18, 2019, 7:34 a.m.