API for xihaoli/STAARpipeline
STAARpipeline for Analyzing Whole-Genome/Whole-Exome Sequencing Data
| Global functions | |
|---|---|
| AI_Individual_Analysis | Source code |
| Dynamic_Window_SCANG | Man page Source code |
| Gene_Centric_Coding | Man page Source code |
| Gene_Centric_Coding_cond | Man page Source code |
| Gene_Centric_Coding_cond_spa | Man page Source code |
| Gene_Centric_Noncoding | Man page Source code |
| Gene_Centric_Noncoding_cond | Man page Source code |
| Gene_Centric_Noncoding_cond_spa | Man page Source code |
| Individual_Analysis | Man page Source code |
| Individual_Analysis_cond | Man page Source code |
| Individual_Analysis_cond_spa | Man page Source code |
| Individual_Score_Test | Source code |
| Individual_Score_Test_SPA | Source code |
| Individual_Score_Test_cond | Source code |
| Individual_Score_Test_cond_multi | Source code |
| Individual_Score_Test_denseGRM | Source code |
| Individual_Score_Test_denseGRM_multi | Source code |
| Individual_Score_Test_multi | Source code |
| Individual_Score_Test_sp | Source code |
| Individual_Score_Test_sp_denseGRM | Source code |
| Individual_Score_Test_sp_denseGRM_multi | Source code |
| Individual_Score_Test_sp_multi | Source code |
| LD_pruning | Man page Source code |
| Sliding_Window | Man page Source code |
| Sliding_Window_Multiple | Source code |
| Sliding_Window_Single | Source code |
| Sliding_Window_cond | Man page Source code |
| Sliding_Window_cond_spa | Man page Source code |
| UTR | Source code |
| UTR_cond | Source code |
| UTR_cond_spa | Source code |
| coding | Source code |
| coding_incl_ptv | Source code |
| disruptive_missense | Source code |
| disruptive_missense_cond | Source code |
| disruptive_missense_cond_spa | Source code |
| downstream | Source code |
| downstream_cond | Source code |
| downstream_cond_spa | Source code |
| enhancer_CAGE | Source code |
| enhancer_CAGE_cond | Source code |
| enhancer_CAGE_cond_spa | Source code |
| enhancer_DHS | Source code |
| enhancer_DHS_cond | Source code |
| enhancer_DHS_cond_spa | Source code |
| fit_nullmodel | Man page Source code |
| genesis2staar_nullmodel | Man page Source code |
| matrix_flip_mean | Source code |
| matrix_flip_minor | Source code |
| missense | Source code |
| missense_cond | Source code |
| missense_cond_spa | Source code |
| ncRNA | Man page Source code |
| ncRNA_cond | Man page Source code |
| ncRNA_cond_spa | Man page Source code |
| noncoding | Source code |
| plof | Source code |
| plof_cond | Source code |
| plof_cond_spa | Source code |
| plof_ds | Source code |
| plof_ds_cond | Source code |
| plof_ds_cond_spa | Source code |
| promoter_CAGE | Source code |
| promoter_CAGE_cond | Source code |
| promoter_CAGE_cond_spa | Source code |
| promoter_DHS | Source code |
| promoter_DHS_cond | Source code |
| promoter_DHS_cond_spa | Source code |
| ptv | Source code |
| ptv_cond | Source code |
| ptv_cond_spa | Source code |
| ptv_ds | Source code |
| ptv_ds_cond | Source code |
| ptv_ds_cond_spa | Source code |
| staar2aistaar_nullmodel | Source code |
| staar2scang_nullmodel | Man page Source code |
| synonymous | Source code |
| synonymous_cond | Source code |
| synonymous_cond_spa | Source code |
| upstream | Source code |
| upstream_cond | Source code |
| upstream_cond_spa | Source code |
