CopyNeutralIMA-package: Reference samples for analysis of IlluminaHumanMethylation...

Description Details Author(s) References


The CopyNeutralIMA package provides a set of 51 samples for IlluminaHumanMethylation450k arrays and a set of 13 samples for IlluminaHumanMethylationEPIC arrays.


The package includes two RGChannelSetExtended objects, one with 51 samples hybridized with the IlluminaHumanMethylation450k array and another one with 13 samples hybridized with the IlluminaHumanMethylationEPIC array.

For the 450k arrays, samples from GEO series GSE49618 \insertCiteGSE49618CopyNeutralIMA, GSE61441 \insertCiteGSE61441CopyNeutralIMA and GSE106089 \insertCiteGSE106089CopyNeutralIMA are provided.

For the EPIC arrays, samples from GEO series GSE86831/ GSE86833 #' \insertCiteGSE86831CopyNeutralIMA, GSE98990 \insertCiteGSE98990CopyNeutralIMA and GSE100825 \insertCiteGSE100825CopyNeutralIMA are also provided.

The provided samples consist of material from healthy patients with nominally no copy number aberrations.

Users may use this data package as controls for their copy number profiling analysis or for testing other tools.

Check the vignette on how to use these data as control samples for conumee.


Maintainer: Xavier Pastor Hostench



xpastor/CopyNeutralIMA documentation built on May 28, 2019, 5:41 a.m.