CopyNeutralIMA-package: Reference samples for analysis of IlluminaHumanMethylation...
In xpastor/CopyNeutralIMA: Copy Neutral Illumina Methylation Arrays
Description
Details
Author(s)
References
Description
The CopyNeutralIMA package provides a set of 51 samples for
IlluminaHumanMethylation450k arrays and a set of 13 samples for
IlluminaHumanMethylationEPIC arrays.
Details
The package includes two RGChannelSetExtended objects, one with 51 samples
hybridized with the IlluminaHumanMethylation450k array and another one with
13 samples hybridized with the IlluminaHumanMethylationEPIC array.
For the 450k arrays, samples from GEO series
GSE49618
\insertCiteGSE49618CopyNeutralIMA,
GSE61441
\insertCiteGSE61441CopyNeutralIMA and
GSE106089
\insertCiteGSE106089CopyNeutralIMA are provided.
For the EPIC arrays, samples from GEO series
GSE86831/
GSE86833 #' \insertCiteGSE86831CopyNeutralIMA,
GSE98990
\insertCiteGSE98990CopyNeutralIMA and
GSE100825
\insertCiteGSE100825CopyNeutralIMA are also provided.
The provided samples consist of material from healthy patients with nominally
no copy number aberrations.
Users may use this data package as controls for their copy number profiling
analysis or for testing other tools.
Check the vignette on how to use these data as control samples for
conumee.
Author(s)
Maintainer: Xavier Pastor Hostench xavier.pastor@compbio-dev.com
Authors:
Moritz Przybilla
References
\insertAllCited
xpastor/CopyNeutralIMA documentation built on May 28, 2019, 5:41 a.m.
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Description Details Author(s) References
Description
The CopyNeutralIMA package provides a set of 51 samples for IlluminaHumanMethylation450k arrays and a set of 13 samples for IlluminaHumanMethylationEPIC arrays.
Details
The package includes two RGChannelSetExtended objects, one with 51 samples hybridized with the IlluminaHumanMethylation450k array and another one with 13 samples hybridized with the IlluminaHumanMethylationEPIC array.
For the 450k arrays, samples from GEO series GSE49618 \insertCiteGSE49618CopyNeutralIMA, GSE61441 \insertCiteGSE61441CopyNeutralIMA and GSE106089 \insertCiteGSE106089CopyNeutralIMA are provided.
For the EPIC arrays, samples from GEO series GSE86831/ GSE86833 #' \insertCiteGSE86831CopyNeutralIMA, GSE98990 \insertCiteGSE98990CopyNeutralIMA and GSE100825 \insertCiteGSE100825CopyNeutralIMA are also provided.
The provided samples consist of material from healthy patients with nominally no copy number aberrations.
Users may use this data package as controls for their copy number profiling analysis or for testing other tools.
Check the vignette on how to use these data as control samples for conumee.
Author(s)
Maintainer: Xavier Pastor Hostench xavier.pastor@compbio-dev.com
Authors:
Moritz Przybilla
References
\insertAllCitedR Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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