getCopyNeutralRGSet: Accessor to the data objects.

In xpastor/CopyNeutralIMA: Copy Neutral Illumina Methylation Arrays

Description

igetCopyNeutralRGSet simplifies the access to the data of the package in ExperimentHub. The allowed values matched of those in the array definition of the RGChannelSet objects from package 'minfi'. If 'ima' is set to 'IlluminaHumanMethylation450k' it will return the object with index 'EH1453' in ExperimentHub; if set to 'IlluminaHumanMethylationEPIC' it will return the object with index 'EH1454'.

Usage

getCopyNeutralRGSet(ima = c("IlluminaHumanMethylation450k",
  "IlluminaHumanMethylationEPIC"))

Arguments

ima	a character string specifying for which array type to retrieve data. Valid values are 'IlluminaHumanMethylation450k' and 'IlluminaHumanMethylationEPIC'.

Value

A RGChannelSet-class object

Examples

rgset_450k <- getCopyNeutralRGSet('IlluminaHumanMethylation450k')
rgset_450k

xpastor/CopyNeutralIMA documentation built on May 28, 2019, 5:41 a.m.