DraAnno.deseq: A DraAnno function for adding Deinococcus radiodurans...
In xpingli/DraAnno: Adding gene ID, protein ID, and annotation to the edgeR processed data
View source: R/DraAnno.deseq2.R
Description
DraAnno.edgeR takes 2 argument: the name of the edgeR processed csv file(containing "logFC","logCPM","LR","PValue","FDR" variables), and in second argument, select "up" and "down" to get either up regulation or down regulation (cutoff parameters are fixed at FDR < 0.05, logFC <= -1 or >=1). Default of write is TRUE, so it automatically writes an annotion term added csv file to your current directory. You can defined the csv file name in "...".
Usage
1
DraAnno.deseq(dataset, select, ..., write = T)
Examples
1
## Not run: DraAnno.edgeR(drad_24_diff_edgeR, "up", "up24hrannotation")
xpingli/DraAnno documentation built on May 4, 2019, 1:25 p.m.
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View source: R/DraAnno.deseq2.R
Description
DraAnno.edgeR takes 2 argument: the name of the edgeR processed csv file(containing "logFC","logCPM","LR","PValue","FDR" variables), and in second argument, select "up" and "down" to get either up regulation or down regulation (cutoff parameters are fixed at FDR < 0.05, logFC <= -1 or >=1). Default of write is TRUE, so it automatically writes an annotion term added csv file to your current directory. You can defined the csv file name in "...".
Usage
1 | DraAnno.deseq(dataset, select, ..., write = T)
|
Examples
1 | ## Not run: DraAnno.edgeR(drad_24_diff_edgeR, "up", "up24hrannotation")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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