MMRDetect.compute.Repindel.similarity: Compute cosine similarity between given indel profile and MMR...
In xqzou/MMRDetect: Mutational Signature-based Classifier for Detecting Mismatch Repair Deficiency in Tumors
Description
Usage
Arguments
Value
View source: R/MMRDetect.compute.variables.R
Description
Compute cosine similarity between given indel profile and MMR gene knockout indel profilesct
Usage
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MMRDetect.compute.Repindel.similarity(
indels,
tissue_type,
MMR_sig_indel = MMRKO_indelsig
)
Arguments
indels
list of indels
tissue_type
tissue type
MMR_sig_indel
mismatch repair gene knockout indel signatures
Value
cosine similarity between given indel list and MMR gene knockout indel profiles
xqzou/MMRDetect documentation built on April 15, 2021, 8:39 a.m.
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Description Usage Arguments Value
View source: R/MMRDetect.compute.variables.R
Description
Compute cosine similarity between given indel profile and MMR gene knockout indel profilesct
Usage
1 2 3 4 5 | MMRDetect.compute.Repindel.similarity(
indels,
tissue_type,
MMR_sig_indel = MMRKO_indelsig
)
|
Arguments
indels |
list of indels |
tissue_type |
tissue type |
MMR_sig_indel |
mismatch repair gene knockout indel signatures |
Value
cosine similarity between given indel list and MMR gene knockout indel profiles
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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