plotRs: Scatterplot of log2 RPF-to-mRNA ratios.

In xryanglab/xtail: Genome-wide assessment of differential translations with ribosome profiling data

Scatterplot of log2 RPF-to-mRNA ratios.

Description

A simple function that plots the log2 RPF-to-mRNA ratios in two conditions. Different classes of genes are labeled with different of color. Each dot, representing a particular gene, are color coded by the category of expression change.

Usage

plotRs(object, ...)

## S4 method for signature 'xtail'
plotRs(object, log2R.cutoff = 1, xlim = NULL, ylim = NULL)

Arguments

object	a xtail object
...	optional arguments. Currently not used
log2R.cutoff	cutoff for categorizing results
xlim	argument for limiting the range plotted on the x axis. See scale_continuous for more details.
ylim	argument for limiting the range plotted on the y axis. See scale_continuous for more details.

Value

a ggplot object

Examples

data(xtailres)
plotRs(xtailres)

xryanglab/xtail documentation built on April 13, 2022, 2:34 p.m.