Files in xyang2uchicago/seq2pathway19
a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data
.DS_Store
CITATION
DESCRIPTION
INDEX
Meta/.DS_Store
Meta/Rd.rds
Meta/data.rds
Meta/features.rds
Meta/hsearch.rds
Meta/links.rds
Meta/nsInfo.rds
Meta/package.rds
Meta/vignette.rds
NAMESPACE
NEWS
R/.DS_Store
R/.Rhistory
R/seq2pathway
R/seq2pathway.r
R/seq2pathway.rdb
R/seq2pathway.rdx
README.md
data/Chipseq_Peak_demo.rda
data/GRanges_demo.rda
data/dat_RNA.rda
data/dat_chip.rda
data/datalist
extexample/Chipseq_peak_annotation.txt
inst/.DS_Store
inst/Function_PeakMutationAnnotation_GENCODE_01142021_AJ_2.py
inst/Function_PeakMutationAnnotation_GENCODE_05182015_AJ_1.py
man/Chipseq_Peak_demo.Rd
man/FisherTest_GO_BP_MF_CC.Rd
man/FisherTest_MsigDB.Rd
man/GRanges_demo.Rd
man/addDescription.Rd
man/dat_RNA.rd
man/dat_chip.rd
man/gene2pathway_test.Rd
man/plotTop10.Rd
man/runseq2gene.Rd
man/runseq2pathway.Rd
seq2pathway.Rproj
vignettes/.RData
vignettes/.Rhistory
vignettes/Fig1_seq2gene.png
vignettes/Fig2_pseudo_scripts_bin_07102014_xy_v2.png
vignettes/Fig3_search_radius_xy.png
vignettes/Fig4_promoter_radius.jpg
vignettes/Fig5_PeakMtoStart_V4.png
vignettes/Fig6_type_xy.png
vignettes/Fig7_BidirectionalRegion.jpg
vignettes/Fig8_gene2pathway_flowchart_xy.png
vignettes/Fig9_Fisher_v2.png
vignettes/seq2pathwaypackage.Rnw
