Files in xyang2uchicago/seq2pathway19
a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data

DESCRIPTION
Meta/Rd.rds
Meta/data.rds
Meta/features.rds
Meta/hsearch.rds
Meta/links.rds
Meta/nsInfo.rds
Meta/package.rds
Meta/vignette.rds
NAMESPACE
R/.DS_Store
R/seq2pathway
R/seq2pathway-internal.r
R/seq2pathway.rdb
R/seq2pathway.rdx
build/vignette.rds
data/Chipseq_Peak_demo.rda
data/GRanges_demo.rda
data/dat_RNA.rda
data/dat_chip.rda
data/datalist
doc/index.html
doc/seq2pathwaypackage.R
doc/seq2pathwaypackage.Rnw
doc/seq2pathwaypackage.pdf
extexample/.DS_Store
extexample/Chipseq_peak_annotation.txt
help/AnIndex
help/aliases.rds
help/paths.rds
help/seq2pathway.rdb
help/seq2pathway.rdx
html/00Index.html
html/Chipseq_Peak_demo.html
html/FisherTest_GO_BP_MF_CC.html
html/FisherTest_MsigDB.html
html/GRanges_demo.html
html/R.css
html/addDescription.html
html/dat_RNA.html
html/dat_chip.html
html/gene2pathway_test.html
html/runseq2gene.html
html/runseq2pathway.html
inst/.DS_Store
inst/CITATION
inst/NEWS
inst/doc/seq2pathwaypackage.R
inst/doc/seq2pathwaypackage.Rnw
inst/doc/seq2pathwaypackage.pdf
inst/extexample/Chipseq_peak_annotation.txt
inst/scripts/Function_PeakMutationAnnotation_GENCODE_05182015.py
inst/seq2pathwaypackage.pdf
man/.DS_Store
man/.Rapp.history
man/Chipseq_Peak_demo.Rd man/FisherTest_GO_BP_MF_CC.Rd man/FisherTest_MsigDB.Rd man/GRanges_demo.Rd man/addDescription.Rd man/dat_RNA.rd man/dat_chip.rd man/gene2pathway_test.Rd man/plotTop10.Rd man/runseq2gene.Rd man/runseq2pathway.Rd
scripts/Function_PeakMutationAnnotation_GENCODE_05182015.py
seq2pathway.Rcheck/00_pkg_src/seq2pathway/DESCRIPTION
seq2pathway.Rcheck/00_pkg_src/seq2pathway/NAMESPACE
seq2pathway.Rcheck/00_pkg_src/seq2pathway/R/seq2pathway-internal.r
seq2pathway.Rcheck/00_pkg_src/seq2pathway/build/vignette.rds
seq2pathway.Rcheck/00_pkg_src/seq2pathway/data/Chipseq_Peak_demo.rda
seq2pathway.Rcheck/00_pkg_src/seq2pathway/data/GRanges_demo.rda
seq2pathway.Rcheck/00_pkg_src/seq2pathway/data/dat_RNA.rda
seq2pathway.Rcheck/00_pkg_src/seq2pathway/data/dat_chip.rda
seq2pathway.Rcheck/00_pkg_src/seq2pathway/data/datalist
seq2pathway.Rcheck/00_pkg_src/seq2pathway/doc/index.html
seq2pathway.Rcheck/00_pkg_src/seq2pathway/doc/seq2pathwaypackage.R
seq2pathway.Rcheck/00_pkg_src/seq2pathway/doc/seq2pathwaypackage.Rnw
seq2pathway.Rcheck/00_pkg_src/seq2pathway/doc/seq2pathwaypackage.pdf
seq2pathway.Rcheck/00_pkg_src/seq2pathway/extexample/Chipseq_peak_annotation.txt
seq2pathway.Rcheck/00_pkg_src/seq2pathway/inst/CITATION
seq2pathway.Rcheck/00_pkg_src/seq2pathway/inst/NEWS
seq2pathway.Rcheck/00_pkg_src/seq2pathway/inst/doc/seq2pathwaypackage.R
seq2pathway.Rcheck/00_pkg_src/seq2pathway/inst/doc/seq2pathwaypackage.Rnw
seq2pathway.Rcheck/00_pkg_src/seq2pathway/inst/doc/seq2pathwaypackage.pdf
seq2pathway.Rcheck/00_pkg_src/seq2pathway/inst/extexample/Chipseq_peak_annotation.txt
seq2pathway.Rcheck/00_pkg_src/seq2pathway/inst/scripts/Function_PeakMutationAnnotation_GENCODE_05182015.py
seq2pathway.Rcheck/00_pkg_src/seq2pathway/inst/seq2pathwaypackage.pdf seq2pathway.Rcheck/00_pkg_src/seq2pathway/man/Chipseq_Peak_demo.Rd seq2pathway.Rcheck/00_pkg_src/seq2pathway/man/FisherTest_GO_BP_MF_CC.Rd seq2pathway.Rcheck/00_pkg_src/seq2pathway/man/FisherTest_MsigDB.Rd seq2pathway.Rcheck/00_pkg_src/seq2pathway/man/GRanges_demo.Rd seq2pathway.Rcheck/00_pkg_src/seq2pathway/man/addDescription.Rd seq2pathway.Rcheck/00_pkg_src/seq2pathway/man/dat_RNA.rd seq2pathway.Rcheck/00_pkg_src/seq2pathway/man/dat_chip.rd seq2pathway.Rcheck/00_pkg_src/seq2pathway/man/gene2pathway_test.Rd seq2pathway.Rcheck/00_pkg_src/seq2pathway/man/plotTop10.Rd seq2pathway.Rcheck/00_pkg_src/seq2pathway/man/runseq2gene.Rd seq2pathway.Rcheck/00_pkg_src/seq2pathway/man/runseq2pathway.Rd
seq2pathway.Rcheck/00_pkg_src/seq2pathway/scripts/Function_PeakMutationAnnotation_GENCODE_05182015.py
seq2pathway.Rcheck/00_pkg_src/seq2pathway/vignettes/Fig1_seq2gene.png
seq2pathway.Rcheck/00_pkg_src/seq2pathway/vignettes/Fig2_pseudo_scripts_bin_07102014_xy_v2.png
seq2pathway.Rcheck/00_pkg_src/seq2pathway/vignettes/Fig3_search_radius_xy.png
seq2pathway.Rcheck/00_pkg_src/seq2pathway/vignettes/Fig4_promoter_radius.jpg
seq2pathway.Rcheck/00_pkg_src/seq2pathway/vignettes/Fig5_PeakMtoStart_V4.png
seq2pathway.Rcheck/00_pkg_src/seq2pathway/vignettes/Fig6_type_xy.png
seq2pathway.Rcheck/00_pkg_src/seq2pathway/vignettes/Fig7_BidirectionalRegion.jpg
seq2pathway.Rcheck/00_pkg_src/seq2pathway/vignettes/Fig8_gene2pathway_flowchart_xy.png
seq2pathway.Rcheck/00_pkg_src/seq2pathway/vignettes/Fig9_Fisher_v2.png
seq2pathway.Rcheck/00_pkg_src/seq2pathway/vignettes/seq2pathwaypackage.Rnw
seq2pathway.Rcheck/00check.log
seq2pathway.Rcheck/00install.out
seq2pathway.Rcheck/Rdlatex.log
seq2pathway.Rcheck/seq2pathway-Ex.R
seq2pathway.Rcheck/seq2pathway-Ex.Rout
seq2pathway.Rcheck/seq2pathway-Ex.pdf
seq2pathway.Rcheck/seq2pathway-Ex.timings
seq2pathway.Rcheck/seq2pathway-manual.log
seq2pathway.Rcheck/seq2pathway-manual.pdf
seq2pathway.Rcheck/seq2pathway/CITATION
seq2pathway.Rcheck/seq2pathway/DESCRIPTION
seq2pathway.Rcheck/seq2pathway/INDEX
seq2pathway.Rcheck/seq2pathway/Meta/Rd.rds
seq2pathway.Rcheck/seq2pathway/Meta/data.rds
seq2pathway.Rcheck/seq2pathway/Meta/features.rds
seq2pathway.Rcheck/seq2pathway/Meta/hsearch.rds
seq2pathway.Rcheck/seq2pathway/Meta/links.rds
seq2pathway.Rcheck/seq2pathway/Meta/nsInfo.rds
seq2pathway.Rcheck/seq2pathway/Meta/package.rds
seq2pathway.Rcheck/seq2pathway/Meta/vignette.rds
seq2pathway.Rcheck/seq2pathway/NAMESPACE
seq2pathway.Rcheck/seq2pathway/NEWS
seq2pathway.Rcheck/seq2pathway/R/seq2pathway
seq2pathway.Rcheck/seq2pathway/R/seq2pathway.rdb
seq2pathway.Rcheck/seq2pathway/R/seq2pathway.rdx
seq2pathway.Rcheck/seq2pathway/data/Chipseq_Peak_demo.rda
seq2pathway.Rcheck/seq2pathway/data/GRanges_demo.rda
seq2pathway.Rcheck/seq2pathway/data/dat_RNA.rda
seq2pathway.Rcheck/seq2pathway/data/dat_chip.rda
seq2pathway.Rcheck/seq2pathway/data/datalist
seq2pathway.Rcheck/seq2pathway/doc/index.html
seq2pathway.Rcheck/seq2pathway/doc/seq2pathwaypackage.R
seq2pathway.Rcheck/seq2pathway/doc/seq2pathwaypackage.Rnw
seq2pathway.Rcheck/seq2pathway/doc/seq2pathwaypackage.pdf
seq2pathway.Rcheck/seq2pathway/extexample/Chipseq_peak_annotation.txt
seq2pathway.Rcheck/seq2pathway/help/AnIndex
seq2pathway.Rcheck/seq2pathway/help/aliases.rds
seq2pathway.Rcheck/seq2pathway/help/paths.rds
seq2pathway.Rcheck/seq2pathway/help/seq2pathway.rdb
seq2pathway.Rcheck/seq2pathway/help/seq2pathway.rdx
seq2pathway.Rcheck/seq2pathway/html/00Index.html
seq2pathway.Rcheck/seq2pathway/html/R.css
seq2pathway.Rcheck/seq2pathway/scripts/Function_PeakMutationAnnotation_GENCODE_05182015.py
seq2pathway.Rcheck/seq2pathway/scripts/Function_PeakMutationAnnotation_GENCODE_05182015.pyc
seq2pathway.Rcheck/seq2pathway/seq2pathwaypackage.pdf
seq2pathway_1.15.0.tar.gz
vignettes/.DS_Store
vignettes/Fig1_seq2gene.png
vignettes/Fig2_pseudo_scripts_bin_07102014_xy_v2.png
vignettes/Fig3_search_radius_xy.png
vignettes/Fig4_promoter_radius.jpg
vignettes/Fig5_PeakMtoStart_V4.png
vignettes/Fig6_type_xy.png
vignettes/Fig7_BidirectionalRegion.jpg
vignettes/Fig8_gene2pathway_flowchart_xy.png
vignettes/Fig9_Fisher_v2.png
vignettes/seq2pathwaypackage.Rnw
xyang2uchicago/seq2pathway19 documentation built on April 18, 2019, 9:42 a.m.