Man pages for xyang2uchicago/seq2pathway19
a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data
| addDescription | Retrieve "gene description" attributes for gene symbol. |
| Chipseq_Peak_demo | chip seq loci data example |
| dat_chip | chip seq data example |
| dat_RNA | RNA sequence data example |
| FisherTest_GO_BP_MF_CC | A wrapper function to perform the Fisher's exact test, using... |
| FisherTest_MsigDB | A wrapper function to perform conditional Fisher's exact... |
| gene2pathway_test | A wrapper function to perform gene2pathway test. |
| GRanges_demo | loci information with GRanges format |
| plotTop10 | A wrapper function to plot top10 test results. |
| runseq2gene | R wrapped python function to map genomic regions on the... |
| runseq2pathway | An function to perform the runseq2pathway algorithm(s). |
