Description Usage Arguments Details Value Author(s)
calc_ref_distribution
calculate reference distribution
1 | calc_ref_distribution(file, common_rare = TRUE, sep = "\t")
|
file |
The full path of the reference data. String. |
common_rare |
An indicator whether to distinguish the features to be common and rare features. Bool. Default is TRUE. |
sep |
The seperator of the reference data. String. Default is \t. |
Given a reference dataset, perform arcsin square root transformation, and calculate its mean distribution, standard deviation of common and rare. The reference dataset should contain relative abundance.
A list of two or three element: mean_distribution and (sd_quartile or sd_quartile_common, sd_quartile_rare).
Liu Cao
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