calc_ref_distribution: Generate mean distribution and quartiles of standard...
In xyomics/bugpower: Generate power calculation report for microbiome data

Description Usage Arguments Details Value Author(s)

View source: R/util.R

calc_ref_distribution calculate reference distribution

1	calc_ref_distribution(file, common_rare = TRUE, sep = "\t")

`file`	The full path of the reference data. String.
`common_rare`	An indicator whether to distinguish the features to be common and rare features. Bool. Default is TRUE.
`sep`	The seperator of the reference data. String. Default is \t.

Given a reference dataset, perform arcsin square root transformation, and calculate its mean distribution, standard deviation of common and rare. The reference dataset should contain relative abundance.

A list of two or three element: mean_distribution and (sd_quartile or sd_quartile_common, sd_quartile_rare).

Liu Cao

xyomics/bugpower documentation built on May 20, 2019, 5:08 p.m.