ref_dat: Reference Data
In xyomics/bugpower: Generate power calculation report for microbiome data
Description
Usage
Format
Source
References
Examples
Description
The data set contains the mean distributions and standard deviation quartiles of
species abundance, metagenomic pathway abundance and metatranscriptomic pathway abundance
(normalized by metagenomics data).
Usage
1
data(ref_data)
Format
A list contains mean distribution vectors and quartile matrix for each type of data.
- mean_distribution_bugs
A vector of mean distribution of species relative abundance.
- sd_quartile_bugs
A vector of 3 quartiles of species relative abundance.
- mean_distribution_pathway_dna
A vector of relative abundance of metagenomic pathways.
- sd_quartile_pathway_dna
A vector of 3 quartiles of relative abundance of metagenomic pathways.
- mean_distribution_pathway_rna
A vector of relative abundance of metatranscritomic pathways.
- sd_quartile_pathway_rna
A vector of 3 quartiles of relative abundance of metatranscriptomic pathways.
Source
References
STAR
Examples
1
xyomics/bugpower documentation built on May 20, 2019, 5:08 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format Source References Examples
Description
The data set contains the mean distributions and standard deviation quartiles of species abundance, metagenomic pathway abundance and metatranscriptomic pathway abundance (normalized by metagenomics data).
Usage
1 | data(ref_data)
|
Format
A list contains mean distribution vectors and quartile matrix for each type of data.
- mean_distribution_bugs
A vector of mean distribution of species relative abundance.
- sd_quartile_bugs
A vector of 3 quartiles of species relative abundance.
- mean_distribution_pathway_dna
A vector of relative abundance of metagenomic pathways.
- sd_quartile_pathway_dna
A vector of 3 quartiles of relative abundance of metagenomic pathways.
- mean_distribution_pathway_rna
A vector of relative abundance of metatranscritomic pathways.
- sd_quartile_pathway_rna
A vector of 3 quartiles of relative abundance of metatranscriptomic pathways.
Source
References
STAR
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.