Man pages for xzheng-ac/scPADGRN
A PADMM approach for reconstructing DGRN using scRNA-seq
| BI | Objective function of Beyesion information criterion (BIC) |
| BIC | Determine parameters of scPADGRN model using Bayesion... |
| DGIE | DGIE score to analyze network differences |
| dimList | Dimension of a list that composed by some matrix. |
| dimMatrix | Dimension of a matrix |
| edges | Cut certain entries from a matrix. |
| gi | General inverse of a matrix |
| gzomat | Generate a zero-one matrix. |
| idCombin | Identify the combination of key regulators. |
| idNodes | Key regulator identification |
| listNodes | Select nodes and edges |
| matrixNodes | Select nodes and edges from gene regulatory network |
| mixDGIE | Mixed DGIE score for dynamic gene regulatory network |
| nodes | Node selection |
| objFunc | Objective function of optimization model |
| orderCluster | Clustering cells according to pseudotime. |
| preADMM | Preconditioned ADMM algorithm for scPADGRN. |
| simgroups | Simulate group data through R package Splatter |
| simulation2 | simulated data generation |
| sto | soft shresholding operater |
