Files in yancychy/DiffChIPL
ChIP-seq differential analysis (DiffChIPL)
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
DiffChIPL.Rproj
LICENSE
NAMESPACE
PC_rumpkd.csv
PC_rumpkd_noInput.csv
Pc_all_sort.bed
Pc_all_sortNochr.bed
R/.DS_Store
R/NCIS.R
R/main.R
R/utils.R
README.html
README.md
Rstudio_git.txt
example/.DS_Store
example/simHist/.DS_Store
example/simHist/DiffChIPL_fitLow.png
example/simHist/MA_DiffChIPL.png
example/simHist/cpmD_jun.csv
example/simHist/hist1_input_1.bam
example/simHist/hist1_input_1.bam.bai
example/simHist/hist1_input_2.bam
example/simHist/hist1_input_2.bam.bai
example/simHist/hist1_input_3.bam
example/simHist/hist1_input_3.bam.bai
example/simHist/hist1_input_4.bam
example/simHist/hist1_input_4.bam.bai
example/simHist/hist1_out_1.bam
example/simHist/hist1_out_1.bam.bai
example/simHist/hist1_out_2.bam
example/simHist/hist1_out_2.bam.bai
example/simHist/hist1_out_3.bam
example/simHist/hist1_out_3.bam.bai
example/simHist/hist1_out_4.bam
example/simHist/hist1_out_4.bam.bai
example/simHist/hist1_peaks_1.bed
example/simHist/hist1_peaks_2.bed
example/simHist/hist1_peaks_3.bed
example/simHist/hist1_peaks_DE.bed
example/simHist/hist1_peaks_down.bed
example/simHist/hist1_peaks_merge.bed
example/simHist/hist1_peaks_up.bed
example/simHist/hist1_refDE.bed
example/simHist/simHist.R
example/simHist/simHist.Rmd
example/simHist/simHist.html
example/simHist/simHist2.R
example/simHist/simHistCount.Data
example/simHist/sim_hist_1.csv
example/simHist/sim_hist_chIPcomp.csv
example/simHist/t_value_DiffBindL_limma.png
example/simHist/t_value_DiffBindL_voom.png
example/utils.R
example/workflow1.jpg
github.R
man/MA.pcc.Rd
man/NCIS.Rd
man/SEG3.Rd
man/cpmNorm.Rd
man/getCommPeaks.Rd
man/getLibsize.Rd
man/getPeakCounts.Rd
man/getPeakCounts0.Rd
man/getPeakRegion.Rd
man/getReadCount.Rd
man/getVB.Rd
man/hello.Rd
man/mrnFactors.Rd
man/omPeaks.Rd
man/plotCorBoxs.Rd
man/plotMAVoc.Rd
man/plotMAVoc2.Rd
man/tmm_matrix.Rd
runRump.R
testRump0.R
