getPeakRegion: Do overlap over input peaks files in same condition, then...

In yancychy/DiffChIPL: ChIP-seq differential analysis (DiffChIPL)

Do overlap over input peaks files in same condition, then merge the control and treatment peaks

Description

Do overlap over input peaks files in same condition, then merge the control and treatment peaks

Usage

getPeakRegion(fd)

Arguments

fd	dataframe the file format is input file to show the sample name, TF, Control, Treatment, bam file path, and peak files path.

Value

list peakL list of GRanges objects, peak coordinates in each peak file po GRanges objects, which contains overlapped peak coordinate in each peak file pu GRanges objects, which contains union peak coordinate in each peak file

Examples

peaksAll = getPeakRegion(fd)

yancychy/DiffChIPL documentation built on Dec. 24, 2024, 11:26 p.m.