plotMAVoc2: Plot MA plot or volcano plot

In yancychy/DiffChIPL: ChIP-seq differential analysis (DiffChIPL)

Plot MA plot or volcano plot

Description

Plot MA plot or volcano plot

Usage

plotMAVoc2(
  mean,
  logfc,
  adj.P.Val,
  refDE = NULL,
  FC = 0,
  padjT = 0.05,
  psize = 1,
  title = "",
  MA = FALSE
)

Arguments

mean	vector
logfc	vector
adj.P.Val	vector
refDE	vector known real DE annotation: raw, Up, and Down
FC	numeric, draw logFC line with given FC value
psize	numeric, adjust the point size
title	string, the title of plot
MA	logical, if is true, MA plot. else, volcano plot
padj	numeric, filter the DE peaks with padj vlaue

Value

p2 ggplot

Examples

bv = getVB(count, fit0, design)

yancychy/DiffChIPL documentation built on Dec. 24, 2024, 11:26 p.m.