Man pages for yancychy/DiffChIPL
ChIP-seq differential analysis (DiffChIPL)
| cpmNorm | Do log2CPM normalization with or without full library size |
| getCommPeaks | Do overlap over input peaks files in same condition, then... |
| getLibsize | Get read counts for each sample from the bam files. |
| getPeakCounts | Get read counts from IP and Input bam file with given peak... |
| getPeakCounts0 | Get read counts from IP and Input bam file with given peak... |
| getPeakRegion | Do overlap over input peaks files in same condition, then... |
| getReadCount | Get read counts from IP and Input bam file with given peak... |
| getVB | Use ridge regression to shrink the variance |
| hello | Hello, World! |
| MA.pcc | Deduce Pearson Correlation Coefficient between M & A Values |
| mrnFactors | Use MRN with or without full library size |
| NCIS | NCIS |
| omPeaks | Do merge or overlap over input peaks files based their... |
| plotCorBoxs | Plot Box plot of normalized samples |
| plotMAVoc | Plot MA plot or volcano plot |
| plotMAVoc2 | Plot MA plot or volcano plot |
| SEG3 | ChIP-seq data of transcription factor Ste12 in yeast _S.... |
| tmm_matrix | Use edgeR to do TMM normalization with or without full... |
