conAHseq: conAHseq
In yangq001/AHIUT: AHIUT
Description
Usage
Arguments
Value
Author(s)
Description
Infer the number of causal SNPs with a sequential procedure using summary statistics and intersection-union tests.
Usage
1
conAHseq(Z,ld,n,k=6,alpha=0.05)
Arguments
Z
a q*1 matrix containing the Z-scores for q SNPs.
ld
a q*q correlation matrix of the q SNPs.
n
a q*1 matrix containing the sample sizes used to get the Z-scores for the q SNPs. Can be a number if the q sample sizes are the same.
k
a maximum number of causal SNPs.
alpha
the significance threshold.
Value
conAHseq returns the p-value of each step as well as the predicted number of causal SNPs.
Author(s)
Yangqing Deng and Wei Pan.
yangq001/AHIUT documentation built on May 29, 2019, 3:18 p.m.
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Description Usage Arguments Value Author(s)
Description
Infer the number of causal SNPs with a sequential procedure using summary statistics and intersection-union tests.
Usage
1 | conAHseq(Z,ld,n,k=6,alpha=0.05)
|
Arguments
Z |
a q*1 matrix containing the Z-scores for q SNPs. |
ld |
a q*q correlation matrix of the q SNPs. |
n |
a q*1 matrix containing the sample sizes used to get the Z-scores for the q SNPs. Can be a number if the q sample sizes are the same. |
k |
a maximum number of causal SNPs. |
alpha |
the significance threshold. |
Value
conAHseq returns the p-value of each step as well as the predicted number of causal SNPs.
Author(s)
Yangqing Deng and Wei Pan.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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