conAHseq2: conAHseq2
In yangq001/AHIUT: AHIUT
Description
Usage
Arguments
Value
Author(s)
Description
A faster version of conAHseq, which considers less cases but gives the causal locations.
Usage
1
conAHseq2(Z,ld,n,k=6,alpha=0.05)
Arguments
Z
a q*1 matrix containing the Z-scores for q SNPs.
ld
a q*q correlation matrix of the q SNPs.
n
a q*1 matrix containing the sample sizes used to get the Z-scores for the q SNPs. Can be a number if the q sample sizes are the same.
k
a maximum number of causal SNPs.
alpha
the significance threshold.
Value
conAHseq2 returns the significant causal SNPs, the p-value of each step and the predicted number of causal SNPs.
Author(s)
Yangqing Deng and Wei Pan.
yangq001/AHIUT documentation built on May 29, 2019, 3:18 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
A faster version of conAHseq, which considers less cases but gives the causal locations.
Usage
1 | conAHseq2(Z,ld,n,k=6,alpha=0.05)
|
Arguments
Z |
a q*1 matrix containing the Z-scores for q SNPs. |
ld |
a q*q correlation matrix of the q SNPs. |
n |
a q*1 matrix containing the sample sizes used to get the Z-scores for the q SNPs. Can be a number if the q sample sizes are the same. |
k |
a maximum number of causal SNPs. |
alpha |
the significance threshold. |
Value
conAHseq2 returns the significant causal SNPs, the p-value of each step and the predicted number of causal SNPs.
Author(s)
Yangqing Deng and Wei Pan.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.