API for yasmina-mekki/gwhap
Genome wide haplotype analysis
| Global functions | |
|---|---|
| .onLoad | Source code |
| .read_gmap_no_internal_chrom_info | Source code |
| .read_gmap_rds | Source code |
| .read_snp_bucket_no_internal_chrom_info | Source code |
| .read_snp_bucket_with_internal_chrom_info | Source code |
| block_test | Source code |
| complete_test | Source code |
| create_augmented_genetic_map | Source code |
| create_blocs | Source code |
| determine_haplotypes_per_bloc | Source code |
| determine_haplotypes_per_chromosome | Source code |
| download_rutgers_map | Source code |
| getAnnotVariants | Source code |
| getAnnotVariants.bgen | Source code |
| getAnnotVariants.default | Source code |
| getAnnotVariants.vcf | Source code |
| getDiploHaplo | Source code |
| getDiploHaplo.bgen | Source code |
| getDiploHaplo.default | Source code |
| getDiploHaplo.haps | Source code |
| getDiploHaplo.vcf | Source code |
| getInternalIID | Source code |
| getInternalIID.bgen | Source code |
| getInternalIID.default | Source code |
| getInternalIID.vcf | Source code |
| get_bgen_file | Source code |
| get_bgi_file | Source code |
| get_bim_file | Source code |
| get_blocs | Source code |
| get_genetic_map | Source code |
| haplotype_bloc_distribution | Source code |
| legacy_determine_haplotypes_per_bloc | Source code |
| legacy_determine_haplotypes_per_chromosome | Source code |
| lm_cov_test_haplotypes | Source code |
| lm_par_test_haplotypes | Source code |
| lm_test_haplotypes | Source code |
| load_haplotypes | Source code |
| par_block_test | Source code |
| par_complete_test | Source code |
| par_single_test | Source code |
| phased_data_loader.bgen | Source code |
| phased_data_loader.haps | Source code |
| phenotype_distribution | Source code |
| phenotype_residualisation | Source code |
| save_haplotypes | Source code |
| save_plot | Source code |
| save_tests | Source code |
| single_test | Source code |
| summary_haplotypes_test | Source code |
| write_blocs | Source code |
| write_genetic_map | Source code |
