Files in yasmina-mekki/gwhap
Genome wide haplotype analysis
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/create_augmented_genetic_map.R
R/create_blocs.R
R/determine_haplotypes.R
R/genetic_map_utils.R
R/gwhap-package.R
R/lm_cov_test_haplotypes.R
R/lm_paral_test_haplotypes.R
R/lm_test_haplotypes.R
R/plotting.R
R/snp_bucket_utils.R
R/utils.R
README.Rmd
README.md
gwhap.Rproj
inst/example/genetic_map_read.R
inst/example/genome_wide_example.Rmd
inst/example/gwhap_ejhg.R
inst/example/gwhap_par_ejhg.R
inst/example/gwhap_perm_ejhg.R
inst/example/haplo_ukb_chr21.R
inst/example/how_to_use_gwhap.Rmd
inst/example/new_interface.Rmd
inst/example/oldies.R-
inst/example/phased_data.R
inst/example/resources.Rmd
inst/example/toy_example.Rmd
inst/example/visualization.Rmd
inst/extdata/RUMapv3_B137_chr1.txt
inst/extdata/chr1.interpolated_genetic_map.gz
inst/extdata/chr1_1000_Genome.txt
inst/extdata/chr2.interpolated_genetic_map.gz
inst/extdata/example.bim
inst/extdata/example_high_density.bim
inst/extdata/haplotypes.bgen
inst/extdata/haplotypes.bgen.bgi
inst/extdata/haplotypes.haps
inst/extdata/haplotypes_many_samples.haps
inst/extdata/small_region.bim
inst/extdata/ukb_chr1_v2.bgen
inst/extdata/ukb_chr1_v2.bgen.bgi
vignettes/part1_genetic_maps.Rmd
vignettes/part2_haplotype_blocks.Rmd
vignettes/part3_individual_haplotype.Rmd
vignettes/part4_haplotype_association.Rmd
vignettes/visualization.Rmd
