libwise: library-wise screening

In ybai3/SCQC: Single Cell Sequencing Data Quality Control

Description

The analysis was performed by randomly selecting a pair of libraries, then conducting Spearman correlation for HK genes, followed by Spearman correlation for NHK genes. Keep the correlation coefficient for HK and for NHK genes. Repeat this procedure for a large number of times, e.g., n = 100.

Usage

libwise(countmatrix,repitation=100)

Arguments

rcleaned_matrix	Gene-wise cleaned countmatrix, containing both of housekeeping and non-housekeeping data
repitation	Repeat times,defaults to 100

Value

a list containing

cor_coef	The correlation coefficients calculated from HK and NHK groups
wilcox	Wilcox test p-value

Note

Please make sure ensebl_id is loaded

Examples

libwise(countmatrix,repitation=100)


{ library-wise }

ybai3/SCQC documentation built on May 19, 2019, 9:40 p.m.