pretreat: pretreat countmatrix

Description Usage Arguments Value Note References Examples

View source: R/pretreat.R

Description

This function removes all-0-genes from the countmatrix and distinguish housekeeping genes from non-housekeeping genes.

Usage

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pretreat(countmatrix, report = T, )

Arguments

countmatrix

Input countmatrix. No header. Each row should represent a gene. Each column should represent a single cell.

Value

It will return a list containing two matrices. One for housekeeping genes. The other one for non-housekeeping genes.

Note

Please remember to load the ensebl_id.RData in the example dataset first.

References

Human housekeeping genes, revisited. Eisenberg E, Levanon EY. https://www.ncbi.nlm.nih.gov/pubmed/23810203

Examples

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data(snu)
pretreat(snu_human_unnormalized)


{ pretreat }

ybai3/SCQC documentation built on May 19, 2019, 9:40 p.m.