In ycl6/scRUtils: Single-Cell Sequencing Analysis Utilities

knitr::opts_chunk$set(error = FALSE, warning = FALSE, message = TRUE, tidy = FALSE,
                      cache = FALSE, dpi = 100)

Overview

scRUtils provides various utilities for visualising and functional analysis of RNA-seq data, particularly single-cell dataset. It evolved from a collection of helper functions that were used in our in-house scRNA-seq processing workflow.

Installation

The package is current available only on GitHub.

devtools::install_github("ycl6/scRUtils")

Load packages

To use scRUtils in a R session, load it using the library() command.

library(scRUtils)

Usage

The documentation of this package is divided into 5 sections:

1. Introduction to scRUtils
2. General data visualisations
3. Single-cell visualisations
4. Markers and DEGs
5. Demo datasets

ycl6/scRUtils documentation built on Feb. 18, 2025, 6:14 a.m.