R/scRUtils-package.R

In ycl6/scRUtils: Single-Cell Sequencing Analysis Utilities

#' scRUtils package
#'
#' The scRUtils package ...
#'
#' @name scRUtils-package
#'
#' @author I-Hsuan Lin
#'
#' @keywords package
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#' cyclone results from a simulated single-cell RNA-seq dataset
#'
#' @name data-phases_assignments
#' @aliases phases_assignments
#' @docType data
#' @keywords datasets
#' @usage data(phases_assignments)
#' @format an object of class list
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#' findDoubletClusters results from a simulated single-cell RNA-seq dataset
#'
#' @name data-dbl_results
#' @aliases dbl_results
#' @docType data
#' @keywords datasets
#' @usage data(dbl_results)
#' @format an object of class DFrame
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#' A processed simulated single-cell RNA-seq dataset
#'
#' @name data-sce
#' @aliases sce
#' @docType data
#' @keywords datasets
#' @usage data(sce)
#' @format an object of class SingleCellExperiment
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#' A edgeR TopTags object produced from the pasilla dataset
#'
#' @name data-res_edger
#' @aliases res_edger
#' @docType data
#' @keywords datasets
#' @usage data(res_edger)
#' @format an object of class TopTags
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#' A DESeq2 DESeqResults produced from the pasilla dataset
#'
#' @name data-res_deseq2
#' @aliases res_deseq2
#' @docType data
#' @keywords datasets
#' @usage data(res_deseq2)
#' @format an object of class DESeqResults
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