geneList: A toy example of a list of gene identifiers and the...

Description Usage Source Examples

Description

The geneList data is compiled from a differential expression analysis of the ALL dataset. It contains just a small number of genes with the corespondent p-values. The information on where to find the GO annotations is stored in the ALL object.

The topDiffGenes function included in this dataset will select the differentially expressed genes, at 0.01 significance level, from geneList.

Usage

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Source

Generated using the ALL gene expression data. See the "scripts" directory.

Examples

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data(geneList)

## print the object
head(geneList)
length(geneList)

## the number of genes with a p-value less than 0.01
sum(topDiffGenes(geneList))

ycl6/topGO-feat documentation built on Aug. 12, 2020, 12:55 a.m.