dbxml2df: Convert drugbank database (xml file) into dataframe.
In yduan004/customCMPdb: Customize and Query Compound Annotation Database

Description Usage Arguments Value Note Author(s) References See Also Examples

View source: R/dbxml_handle.R

Download the original DrugBank database at http://www.drugbank.ca/releases/latest (xml file) into your current working directory and rename as "drugbank.xml" then run: drugbank_df = dbxml2df(xmlfile="drugbank.xml", version="5.0.10").

1	dbxml2df(xmlfile, version)

`xmlfile`	Character(1), file path to the xml file downloaded from the DrugBank website at https://www.drugbank.ca/releases/latest
`version`	Character(1), DrugBank version of the xml file

Dataframe of drugbank xml database.

This process with take about 20 minutes.

Yuzhu Duan yduan004@ucr.edu

http://www.drugbank.ca/releases/latest

df2SQLite

library(XML)
## Not run: 
## download the original drugbank database at 
\url{http://www.drugbank.ca/releases/latest} (xml file)
## into your current directory and rename as drugbank.xml

## convert drugbank database (xml file) into dataframe: 
drugbank_df <- dbxml2df(xmlfile="drugbank.xml", version="5.0.10")

## End(Not run)